exDE: Extensible Differential Equations for Mosquito-Borne Pathogen Modeling

Provides tools to set up modular ordinary and delay differential equation models for mosquito-borne pathogens, focusing on malaria. Modular design is achieved by S3 dispatch on parameter lists for each component which is used to compute the full set of differential equations which may be solved using any of the packages for numerical simulation of differential equations in R. The methods implemented by this package are described in Wu et al. (2022) <doi:10.1101/2022.11.07.22282044>.

Version: 1.0.0
Imports: deSolve, expm, MASS
Suggests: ggplot2, data.table, knitr, rmarkdown, testthat (≥ 3.0.0)
Published: 2022-11-18
Author: Sean L. Wu ORCID iD [aut, cre], David L. Smith ORCID iD [aut]
Maintainer: Sean L. Wu <slwood89 at gmail.com>
BugReports: https://github.com/dd-harp/exDE/issues
License: MIT + file LICENSE
URL: https://dd-harp.github.io/exDE/
NeedsCompilation: no
Citation: exDE citation info
Materials: README NEWS
CRAN checks: exDE results


Reference manual: exDE.pdf
Vignettes: Contributing
Ross-Macdonald Adult Mosquito Model
Basic Competition Aquatic Mosquito Model
Trace (exogenously forced) Aquatic Mosquito Model
5-3-4 Example
Hybrid MoI (Multiplicity of Infection) Human Model
SIP (Susceptible-Infected-Prophylaxis) Human Model
SIS (Susceptible-Infected-Susceptible) Human Model
Spatial Metrics
ITN-based Vector Control


Package source: exDE_1.0.0.tar.gz
Windows binaries: r-devel: exDE_1.0.0.zip, r-release: exDE_1.0.0.zip, r-oldrel: exDE_1.0.0.zip
macOS binaries: r-release (arm64): exDE_1.0.0.tgz, r-oldrel (arm64): exDE_1.0.0.tgz, r-release (x86_64): exDE_1.0.0.tgz, r-oldrel (x86_64): exDE_1.0.0.tgz


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