Last updated on 2023-10-03 01:05:02 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 3.2-2 | 74.01 | 391.01 | 465.02 | OK | |
| r-devel-linux-x86_64-debian-gcc | 3.2-2 | 58.12 | 293.46 | 351.58 | OK | |
| r-devel-linux-x86_64-fedora-clang | 3.2-2 | 603.50 | OK | |||
| r-devel-linux-x86_64-fedora-gcc | 3.2-2 | 598.57 | OK | |||
| r-devel-windows-x86_64 | 3.2-2 | 61.00 | 344.00 | 405.00 | NOTE | |
| r-patched-linux-x86_64 | 3.2-2 | 85.06 | 370.74 | 455.80 | OK | |
| r-release-linux-x86_64 | 3.2-2 | 68.18 | 376.33 | 444.51 | OK | |
| r-release-macos-arm64 | 3.2-2 | 199.00 | NOTE | |||
| r-release-macos-x86_64 | 3.2-2 | 332.00 | NOTE | |||
| r-release-windows-x86_64 | 3.2-2 | 79.00 | 415.00 | 494.00 | NOTE | |
| r-oldrel-macos-arm64 | 3.2-2 | 107.00 | ERROR | |||
| r-oldrel-macos-x86_64 | 3.2-2 | 307.00 | ERROR | |||
| r-oldrel-windows-x86_64 | 3.2-2 | 76.00 | 424.00 | 500.00 | NOTE |
Version: 3.2-2
Check: installed package size
Result: NOTE
installed size is 5.4Mb
sub-directories of 1Mb or more:
doc 1.7Mb
libs 1.3Mb
simulationStudy 1.6Mb
Flavors: r-devel-windows-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64, r-oldrel-macos-arm64, r-oldrel-windows-x86_64
Version: 3.2-2
Check: tests
Result: ERROR
Running ‘DAS-scale.R’ [0s/0s]
Running ‘DASvar-fallback.R’ [3s/3s]
Running ‘PsiFunction.R’ [3s/3s]
Running ‘asymptoticEfficiency.R’ [2s/2s]
Running ‘compare-methods.R’ [3s/4s]
Comparing ‘compare-methods.Rout’ to ‘compare-methods.Rout.save’ ...93,94c93,95
< Timing stopped at: 0.14 0.003 0.148
< Error : invalid assignment for reference class field 'b.s', should be from class "numeric" or a subclass (was class "dgeMatrix")
---
> Robust linear mixed model fit by DASvar
> Formula: formula
> Data: data
95a97,128
> Scaled residuals:
> Min 1Q Median 3Q Max
> -1.2872 -0.6775 0.1308 0.7136 1.7416
>
> Random effects:
> Groups Name Variance Std.Dev.
> Batch (Intercept) 2184 46.73
> Residual 2933 54.16
> Number of obs: 30, groups: Batch, 6
>
> Fixed effects:
> Estimate Std. Error t value
> (Intercept) 1526.32 22.04 69.25
>
> Robustness weights for the residuals:
> 25 weights are ~= 1. The remaining 5 ones are
> 2 3 5 18 23
> 0.988 0.988 0.984 0.770 0.988
>
> Robustness weights for the random effects:
> [1] 1.000 1.000 1.000 1.000 0.999 1.000
>
> Rho functions used for fitting:
> Residuals:
> eff: smoothed Huber (k = 1.345, s = 10)
> sig: smoothed Huber, Proposal 2 (k = 1.345, s = 10)
> Random Effects, variance component 1 (Batch):
> eff: smoothed Huber (k = 1.345, s = 10)
> vcp: smoothed Huber, Proposal 2 (k = 1.345, s = 10)
> A B C D E F
> -19.822 1.081 33.966 -30.283 67.013 -51.900
>
97,98c130,132
< Timing stopped at: 0.04 0 0.043
< Error : invalid assignment for reference class field 'b.s', should be from class "numeric" or a subclass (was class "dgeMatrix")
---
> Robust linear mixed model fit by DAStau
> Formula: formula
> Data: data
99a134,165
> Scaled residuals:
> Min 1Q Median 3Q Max
> -1.2656 -0.6593 0.1234 0.6972 1.7041
>
> Random effects:
> Groups Name Variance Std.Dev.
> Batch (Intercept) 2359 48.57
> Residual 3059 55.31
> Number of obs: 30, groups: Batch, 6
>
> Fixed effects:
> Estimate Std. Error t value
> (Intercept) 1526.34 22.82 66.88
>
> Robustness weights for the residuals:
> 25 weights are ~= 1. The remaining 5 ones are
> 2 3 5 18 23
> 0.996 0.996 0.992 0.787 0.994
>
> Robustness weights for the random effects:
> [1] 1 1 1 1 1 1
>
> Rho functions used for fitting:
> Residuals:
> eff: smoothed Huber (k = 1.345, s = 10)
> sig: smoothed Huber, Proposal 2 (k = 1.345, s = 10)
> Random Effects, variance component 1 (Batch):
> eff: smoothed Huber (k = 1.345, s = 10)
> vcp: smoothed Huber, Proposal 2 (k = 1.345, s = 10)
> A B C D E F
> -19.761 1.048 33.601 -29.717 66.229 -51.399
>
105c171
<
---
> IRWLS
106a173
> (Intercept) 1526 (22)
108d174
<
109a176
> (Intercept) | Batch 46.7
110a178
> sigma 54.2
112d179
< sigma
115c182
<
---
> IRWLS
116a184
> (Intercept) 1526 (22.8)
118d185
<
119a187
> (Intercept) | Batch 48.6
120a189
> sigma 55.3
122d190
< sigma
231,232c299,301
< Timing stopped at: 0.058 0 0.06
< Error : invalid assignment for reference class field 'b.s', should be from class "numeric" or a subclass (was class "dgeMatrix")
---
> Robust linear mixed model fit by DASvar
> Formula: formula
> Data: data
233a303,348
> Scaled residuals:
> Min 1Q Median 3Q Max
> -2.2164 -0.6474 0.0528 0.5885 3.4337
>
> Random effects:
> Groups Name Variance Std.Dev.
> plate (Intercept) 0.8798 0.9380
> sample (Intercept) 4.3155 2.0774
> Residual 0.2954 0.5435
> Number of obs: 144, groups: plate, 24; sample, 6
>
> Fixed effects:
> Estimate Std. Error t value
> (Intercept) 23.0116 0.8929 25.77
>
> Robustness weights for the residuals:
> 122 weights are ~= 1. The remaining 22 ones are summarized as
> Min. 1st Qu. Median Mean 3rd Qu. Max.
> 0.392 0.669 0.843 0.822 0.978 0.999
>
> Robustness weights for the random effects:
> 25 weights are ~= 1. The remaining 5 ones are
> 7 13 19 24 30
> 0.893 0.853 0.893 0.982 0.905
>
> Rho functions used for fitting:
> Residuals:
> eff: smoothed Huber (k = 1.345, s = 10)
> sig: smoothed Huber, Proposal 2 (k = 1.345, s = 10)
> Random Effects, variance component 1 (plate):
> eff: smoothed Huber (k = 1.345, s = 10)
> vcp: smoothed Huber, Proposal 2 (k = 1.345, s = 10)
> Random Effects, variance component 2 (sample):
> eff: smoothed Huber (k = 1.345, s = 10)
> vcp: smoothed Huber, Proposal 2 (k = 1.345, s = 10)
> a b c d e f g
> 4.436e-01 4.436e-01 1.241e-01 2.030e-01 -1.094e-06 -2.536e-01 -8.075e-01
> h i j k l m n
> 4.872e-01 -4.441e-01 -4.541e-01 5.688e-01 2.945e-01 8.498e-01 2.945e-01
> o p q r s t u
> 5.481e-01 2.012e-02 -1.615e-01 -1.623e-01 -8.075e-01 5.688e-01 -4.951e-01
> v w x A B C D
> -1.628e-01 -4.495e-01 -7.084e-01 5.551e-01 -2.672e-01 4.955e-01 -3.700e-02
> E F
> -2.667e-02 -7.956e-01
>
235,236c350,352
< Timing stopped at: 0.054 0.001 0.058
< Error : invalid assignment for reference class field 'b.s', should be from class "numeric" or a subclass (was class "dgeMatrix")
---
> Robust linear mixed model fit by DAStau
> Formula: formula
> Data: data
237a354,397
> Scaled residuals:
> Min 1Q Median 3Q Max
> -2.161 -0.642 0.057 0.574 3.333
>
> Random effects:
> Groups Name Variance Std.Dev.
> plate (Intercept) 0.9054 0.9515
> sample (Intercept) 4.5338 2.1293
> Residual 0.3114 0.5581
> Number of obs: 144, groups: plate, 24; sample, 6
>
> Fixed effects:
> Estimate Std. Error t value
> (Intercept) 23.0002 0.9148 25.14
>
> Robustness weights for the residuals:
> 126 weights are ~= 1. The remaining 18 ones are summarized as
> Min. 1st Qu. Median Mean 3rd Qu. Max.
> 0.404 0.684 0.838 0.802 0.920 0.997
>
> Robustness weights for the random effects:
> 25 weights are ~= 1. The remaining 5 ones are
> 7 13 19 24 30
> 0.906 0.866 0.906 0.989 0.926
>
> Rho functions used for fitting:
> Residuals:
> eff: smoothed Huber (k = 1.345, s = 10)
> sig: smoothed Huber, Proposal 2 (k = 1.345, s = 10)
> Random Effects, variance component 1 (plate):
> eff: smoothed Huber (k = 1.345, s = 10)
> vcp: smoothed Huber, Proposal 2 (k = 1.345, s = 10)
> Random Effects, variance component 2 (sample):
> eff: smoothed Huber (k = 1.345, s = 10)
> vcp: smoothed Huber, Proposal 2 (k = 1.345, s = 10)
> a b c d e f g h
> 0.450838 0.450838 0.128411 0.205545 0.000502 -0.256535 -0.815539 0.490628
> i j k l m n o p
> -0.446899 -0.456519 0.575339 0.297994 0.858936 0.297994 0.554159 0.020649
> q r s t u v w x
> -0.163812 -0.164206 -0.815539 0.575339 -0.501182 -0.164248 -0.451685 -0.717135
> A B C D E F
> 0.559397 -0.265494 0.499107 -0.034026 -0.023533 -0.794300
>
243c403
<
---
> IRWLS
244a405
> (Intercept) 23 (0.893)
246d406
<
247a408,409
> (Intercept) | plate 0.938
> (Intercept) | sample 2.077
248a411
> sigma 0.543
250d412
< sigma
253c415
<
---
> IRWLS
254a417
> (Intercept) 23 (0.915)
256d418
<
257a420,421
> (Intercept) | plate 0.952
> (Intercept) | sample 2.129
258a423
> sigma 0.558
260d424
< sigma
Running ‘expectations.R’ [0s/0s]
Running ‘fitDatasets.R’ [2s/2s]
Running the tests in ‘tests/fitDatasets.R’ failed.
Last 13 lines of output:
Fixed Effects:
(Intercept)
1.899
> fitDatasets_rlmer_custom <- function(datasets) {
+ return(fitDatasets_rlmer(datasets,
+ method = "DASvar",
+ tuningParameter = c(1.345, 2.28, 1.345, 2.28, 5.14, 5.14),
+ label = "fitDatasets_rlmer_custom"))
+ }
> test(fitDatasets_rlmer_custom(oneWay))
Error : invalid assignment for reference class field 'b.s', should be from class "numeric" or a subclass (was class "dgeMatrix")
Error in test(fitDatasets_rlmer_custom(oneWay)) :
!is(result[[1]], "try-error") is not TRUE
Calls: test -> stopifnot
Execution halted
Flavor: r-oldrel-macos-arm64
Version: 3.2-2
Check: running R code from vignettes
Result: ERROR
Errors in running code in vignettes:
when running code in ‘rlmer.Rnw’
...
> fm <- lmer(diameter ~ (1 | plate) + (1 | sample),
+ PenicillinC)
> rfm <- rlmer(diameter ~ (1 | plate) + (1 | sample),
+ PenicillinC)
When sourcing ‘rlmer.R’:
Error: invalid assignment for reference class field ‘b.s’, should be from class “numeric” or a subclass (was class “dgeMatrix”)
Execution halted
when running code in ‘simulationStudies.Rnw’
...
> source(system.file("simulationStudy/breakdown.R",
+ package = "robustlmm"))
Error : invalid assignment for reference class field ‘b.s’, should be from class “numeric” or a subclass (was class “dgeMatrix”)
Error : invalid assignment for reference class field ‘b.s’, should be from class “numeric” or a subclass (was class “dgeMatrix”)
When sourcing ‘simulationStudies.R’:
Error: Error calling function 'fitDatasets_rlmer_DAStau_lmerNoFit'. Running the function produced the following error:
Error : invalid assignment for reference class field ‘b.s’, should be from class “numeric” or a subclass (was class “dgeMatrix”)
Execution halted
‘rlmer.Rnw’ using ‘UTF-8’... failed
‘simulationStudies.Rnw’ using ‘UTF-8’... failed
Flavor: r-oldrel-macos-arm64
Version: 3.2-2
Check: re-building of vignette outputs
Result: NOTE
Error(s) in re-building vignettes:
--- re-building ‘rlmer.Rnw’ using Sweave
Loading required package: robustlmm
Loading required package: lme4
Loading required package: Matrix
Warning in eval(expr, .GlobalEnv) :
Current dir: /Volumes/Builds/packages/big-sur-arm64/results/4.2/robustlmm.Rcheck/robustlmm/ has contents: CITATION, DESCRIPTION, INDEX, Meta, NAMESPACE, R, doc, help, html, libs, simulationStudy
Warning in eval(expr, .GlobalEnv) :
doc dir: /Volumes/Builds/packages/big-sur-arm64/results/4.2/robustlmm.Rcheck/robustlmm/doc has contents: Penicillin.R, ggplot.theme.R, index.html, plots.R, rlmer.R, rlmer.Rnw, rlmer.pdf, simulationStudies.R, simulationStudies.Rnw, simulationStudies.pdf, sleepstudy.R
Warning in eval(expr, .GlobalEnv) :
Filename: /Volumes/Builds/packages/big-sur-arm64/results/4.2/robustlmm.Rcheck/robustlmm/doc/Penicillin.R
Error: processing vignette 'rlmer.Rnw' failed with diagnostics:
chunk 5 (label = fitPC)
Error : invalid assignment for reference class field ‘b.s’, should be from class “numeric” or a subclass (was class “dgeMatrix”)
--- failed re-building ‘rlmer.Rnw’
--- re-building ‘simulationStudies.Rnw’ using Sweave
Loading required package: ggplot2
Warning: Removed 75 rows containing missing values (`geom_line()`).
Warning: Removed 2 rows containing missing values (`geom_hline()`).
Warning: Removed 2 rows containing missing values (`geom_hline()`).
Error : invalid assignment for reference class field ‘b.s’, should be from class “numeric” or a subclass (was class “dgeMatrix”)
Error : invalid assignment for reference class field ‘b.s’, should be from class “numeric” or a subclass (was class “dgeMatrix”)
Error: processing vignette 'simulationStudies.Rnw' failed with diagnostics:
chunk 15 (label = source-breakdown-code)
Error in stopOnFailingFit(fit, "Running the function produced the following error:\n", :
Error calling function 'fitDatasets_rlmer_DAStau_lmerNoFit'. Running the function produced the following error:
Error : invalid assignment for reference class field ‘b.s’, should be from class “numeric” or a subclass (was class “dgeMatrix”)
--- failed re-building ‘simulationStudies.Rnw’
SUMMARY: processing the following files failed:
‘rlmer.Rnw’ ‘simulationStudies.Rnw’
Error: Vignette re-building failed.
Execution halted
Flavor: r-oldrel-macos-arm64
Version: 3.2-2
Check: whether package can be installed
Result: ERROR
Installation failed.
Flavor: r-oldrel-macos-x86_64