scalpel: Processes Calcium Imaging Data

Identifies the locations of neurons, and estimates their calcium concentrations over time using the SCALPEL method proposed in Petersen, Ashley; Simon, Noah; Witten, Daniela. SCALPEL: Extracting neurons from calcium imaging data. Ann. Appl. Stat. 12 (2018), no. 4, 2430–2456. doi:10.1214/18-AOAS1159. <https://projecteuclid.org/euclid.aoas/1542078051>.

Version: 1.0.2
Imports: Matrix, R.matlab, protoclust, igraph, gam
Suggests: knitr, rmarkdown
Published: 2020-02-13
Author: Ashley Petersen
Maintainer: Ashley Petersen <ashleyjpete at gmail.com>
License: GPL-2 | GPL-3 [expanded from: GPL (≥ 2)]
URL: www.ajpete.com/software
NeedsCompilation: yes
CRAN checks: scalpel results

Downloads:

Reference manual: scalpel.pdf
Package source: scalpel_1.0.2.tar.gz
Windows binaries: r-devel: scalpel_1.0.2.zip, r-devel-gcc8: scalpel_1.0.2.zip, r-release: scalpel_1.0.2.zip, r-oldrel: scalpel_1.0.2.zip
OS X binaries: r-release: scalpel_1.0.2.tgz, r-oldrel: scalpel_1.0.2.tgz
Old sources: scalpel archive

Linking:

Please use the canonical form https://CRAN.R-project.org/package=scalpel to link to this page.